Postgram keeps the data you and your agents work from in one inspectable place: notes, documents, tasks, people, projects, interactions, decisions, and agent memory. Humans use the browser UI and CLI; agents use the same corpus over MCP, REST, or the CLI.
It is more than an agent-memory layer. Postgram preserves typed source objects, supports GTD-style task management and Markdown folder sync, combines full-text and vector retrieval with a knowledge graph, and separates short-lived agent working context from durable memory.
Why Postgram
- One private corpus across tools. Give different agents and devices access to the same data without tying it to one editor or hosted memory provider.
- Inspectable source data. Store typed entities instead of opaque chat summaries, then search, edit, link, archive, or delete them yourself.
- Search before graph expansion. Hybrid retrieval finds relevant entities; edge summaries tell an agent when related graph context is worth following.
- Working context is not durable memory. Session context has its own scope and lifecycle; grooming can archive it or distill selected context into durable memory.
- Operator control. Choose where PostgreSQL runs, which embedding and extraction providers are allowed, who receives API keys, and what is kept.
Postgram is built for one person or a small trusted team running a local or single-VM deployment. It is not a hosted service or a multi-tenant SaaS platform. Knowledge extraction is optional, and the provided Docker Compose setup binds the raw API and UI ports to loopback by default.
Quick Start (Docker Compose)
You need Git, Docker, and Docker Compose. Node.js 22+ is needed only for local
development or for installing the pgm CLI; gpg is needed only for encrypted
CLI backups.
-
Clone Postgram:
git clone https://github.com/ivo-toby/postgram.git cd postgram -
Choose an embedding path before the first start. For the local default, install and start Ollama on the Docker host, then pull Postgram's default embedding model:
ollama pull bge-m3For hosted OpenAI embeddings instead, create a
.envfile containing a real key before starting Compose:OPENAI_API_KEY=<your-openai-key> -
Start the stack:
docker compose up -d --buildThe first run creates persistent Docker volumes for PostgreSQL and installation secrets. No
.envfile is required for the default Compose path. -
Read the one-time bootstrap token:
docker compose logs mcp-server \ | grep 'Bootstrap token:' \ | tail -n 1The plaintext appears only in the original first-start logs. Capture it before recreating the API container or discarding those logs.
-
Open http://127.0.0.1:3000/admin, paste the token, create the first admin, enroll MFA, and follow the onboarding flow.
-
Confirm the selected provider in the Admin Config tab. If you add or change staged settings, save, validate, and apply them, then restart
mcp-serverwhen Admin marks a restart as required:docker compose restart mcp-serverWhen Ollama runs on the Docker host, its base URL is
http://host.docker.internal:11434. Optional LLM relationship extraction is disabled by default and can use OpenAI, Anthropic, Ollama, or an OpenAI-compatible endpoint. Changing the embedding provider, model, or dimensions after the first start is migration work and is blocked from a simple config apply. -
Check health, then create an API key in the Admin Overview tab. For the smoke test below, allow
readandwrite, thememoryentity type, andpersonalvisibility:curl -fsS http://127.0.0.1:3100/healthThe response should include
"status":"ok"and"postgres":"connected". -
Install the CLI and verify an authenticated write and search. Enrichment is asynchronous, so wait for
pgm queueto report no pending work before the search:npm install -g @ivotoby/postgram-cli export PGM_API_URL=http://127.0.0.1:3100 export PGM_API_KEY='<plaintext-api-key>' pgm store "Postgram quick start is working" \ --type memory \ --visibility personal \ --tags quickstart pgm queue pgm search "quick start"
If embeddings are unreachable, Postgram still starts and accepts writes, but enrichment and search will fail until the provider is available. See the full quick start and troubleshooting guide for the longer path.
For access from ChatGPT, Claude, or another remote MCP client, put Postgram behind HTTPS, enable OAuth, and follow the MCP integration guide. Do not publish the loopback development ports directly to the internet.
What It Does
Postgram provides:
- durable storage for typed entities:
memory,person,project,task,interaction,document - hybrid BM25 + vector search with asynchronous enrichment
- knowledge graph with typed directional edges between entities
- LLM-powered relationship extraction (OpenAI, Anthropic, or Ollama)
- document sync from local markdown repos via manifest comparison
- browser interfaces for knowledge work and guarded administration
- UMAP and PCA projections of embedded entities
- GTD-style capture, task organization, and Kanban views
- scoped API-key authentication and visibility restrictions
- a REST API for application and automation access
- a Streamable HTTP MCP endpoint for agent-native tool access
- a CLI (
pgm) for humans and agents - a container-local admin CLI (
pgm-admin) - Talon SQLite migration tooling
- encrypted backup support
- audit logging for mutating and privileged operations
How It Works
Postgram is a TypeScript Node.js application built around a service layer.
Main components:
- PostgreSQL +
pgvectorfor persistence and vector search - Hono for the HTTP server
- MCP over Streamable HTTP for agent-facing tool access
- CLI/admin CLIs built with Commander
- background enrichment worker for chunking, embeddings, and LLM extraction
High-level flow:
- a client stores or updates an entity
- the entity is written immediately
- enrichment runs asynchronously: chunking, embedding, and optionally LLM extraction
- chunks and embeddings are produced in the background
- edges are created from extracted relationships (if extraction is enabled)
- search queries use hybrid BM25 + vector scoring, with optional graph expansion
Main Features
1. Typed Knowledge Storage
Store structured knowledge objects with:
type(memory, person, project, task, interaction, document)contenttagsvisibility(personal, work, shared)status- arbitrary JSON metadata
Memory Roles
Postgram supports two roles for memory entities:
durable_memory: long-term memory future agents should trust, such as decisions, preferences, constraints, root causes, and completed-work summaries.session_context: working context for resuming recent conversations. Session context is scoped to the calling client, embedded for semantic recall, and skipped by graph extraction.
Use session context for "where were we in this thread?" Use durable memory for "what should future agents remember as true?"
CLI users can write session context with pgm memory session-context and search
it with pgm search --memory-role session_context.
Operators can groom stale session context with pgm-admin memory groom.
Use --client-id <client-id> for one client or --all-clients to batch over
every session-context scope. --all-clients keeps each client scope separate;
it is operational batching, not cross-client consolidation.
--older-than <duration> defaults to 7d and accepts values like 30m,
4h, 7d, or 0d. --dry-run previews eligible memories without calling
the LLM. Grooming has no default candidate cap; pass --limit <n> when you
want to process a bounded batch.
--mode archive --yes archives eligible working context directly.
--mode promote --yes uses the configured extraction LLM to decide whether
each session-context memory should be promoted; promoted memories are distilled
into new durable_memory entities, the source context is archived, and
provenance is recorded with metadata.promoted_to plus a promoted_to edge.
Authenticated users and agents can self-groom only their own client-scoped session context:
pgm memory groom --dry-run --older-than 7d
pgm memory groom --older-than 14d --topic postgram --tag session-context --yes
The normal CLI derives scope from PGM_API_KEY; it does not accept
--client-id, --all-clients, or promotion mode. Archive requires --yes.
Optional filters are --topic, --session-id, and repeatable --tag.
MCP clients can use the groom_session_context tool with the same self scope:
{
"mode": "dry_run",
"older_than": "7d",
"topic": "postgram",
"session_id": "optional-session-id",
"tags": ["session-context"]
}
MCP mode is dry_run or archive; promotion remains admin-only.
For scheduled maintenance, run grooming from the host that has access to the Postgram container. This cron example assesses eligible session context for all client scopes every three days at 03:17 and appends JSON output to a log. The wrapper detects that cron does not provide a TTY and runs non-interactively:
17 3 */3 * * cd /path/to/postgram && ./bin/pgm-admin --json memory groom --all-clients --older-than 7d --mode promote --yes >> /var/log/postgram-memory-groom.log 2>&1
Use --mode archive --yes instead if you want to archive eligible working
context without LLM-assisted promotion. Run the same command with --dry-run
first to verify the eligible set.
Operators can also review durable memory quality without mutating the durable claim itself:
./bin/pgm-admin memory groom-durable --dry-run --older-than 30d
./bin/pgm-admin memory groom-durable --mode mark --yes --older-than 30d
Durable grooming selects active durable_memory rows, including legacy memory
rows with no metadata.memory_role, and classifies them as keep,
needs_grooming, archive, or superseded. Mark mode writes
metadata.durable_grooming with the outcome, reason, review timestamp, and any
LLM suggestions. It does not rewrite content, change status, archive rows, or
merge duplicates.
To actually clean the marked rows, apply the grooming labels:
./bin/pgm-admin memory apply-durable-grooming --dry-run
./bin/pgm-admin memory apply-durable-grooming --yes
Apply mode defaults to auto: needs_grooming memories are rewritten from the
stored suggestion or the configured extraction LLM, while archive and
superseded memories are archived. Rewrites clear stale chunks and re-queue
embedding enrichment. Use --mode rewrite or --mode archive, plus
--status, --topic, --tag, --visibility, or --limit, to narrow the
batch.
2. Async Enrichment
Entities with content are persisted first and enriched later. Each entity
tracks enrichment_status: pending, completed, or failed. Failed
entities are retried up to 3 times with a 5-minute backoff.
3. Hybrid Search
Search blends vector cosine similarity (60%) with BM25 keyword ranking (40%) transparently. Search requires a reachable embedding provider; if that provider is unavailable, writes still succeed but enrichment and search fail until it recovers. Results include:
- ranked results with blended scores
- similarity scores
- recency-adjusted scores
- matching chunk text
- optional 1-hop graph neighbors (
expand_graphparameter)
4. Knowledge Graph
Entities can be connected by typed directional edges:
- relation types:
involves,assigned_to,part_of,blocked_by,mentioned_in,related_to, or any custom type - edges have a confidence score (1.0 for manual, LLM-assigned for extracted)
- graph traversal via
expandwith configurable depth (1-3 hops) - duplicate edge prevention via
UNIQUE(source_id, target_id, relation) - edges are created manually via
link/unlinkor automatically by the LLM extraction pipeline
5. LLM Extraction
When enabled, the enrichment worker extracts relationships from entity content using an LLM. Extracted entity names are matched against existing entities and edges are created automatically.
Supported providers:
| Provider | Model default | Env vars required |
|---|---|---|
| OpenAI | gpt-4o-mini |
OPENAI_API_KEY |
| Anthropic | claude-haiku-4-5-20251001 |
ANTHROPIC_API_KEY |
| Ollama | llama3.2 |
OLLAMA_BASE_URL (default: http://localhost:11434) |
These are configuration defaults, not model-quality recommendations. Graph extraction is a constrained structured-output task; validate the resulting edges on your own corpus before running a large backfill, especially with small local models.
6. Document Sync
Sync local directories of markdown files into postgram:
pgm sync ~/Documents/personal-notes
pgm sync ~/Documents/cf-notes --repo cf-notes --quiet
The CLI walks the directory for .md files, computes SHA-256 hashes, and sends
a full manifest to the server. The server diffs against stored state and
creates, updates, or archives document entities. Supports --dry-run and cron
scheduling.
7. Access Control
API keys can be restricted by:
- scopes:
read,write,delete,sync - allowed entity types
- allowed visibility levels
8. Task Management
Tasks are first-class entities with convenience operations for:
- create (with GTD context and due dates)
- list (filtered by status and context)
- update
- complete (with completion timestamp)
9. Multiple Interfaces
The same service layer is exposed through:
- REST API
- Streamable HTTP MCP endpoint
pgmCLIpgm-adminCLI (./bin/pgm-admin)- Browser extensions for Chrome and
Firefox — one-click web clipper
that captures the current page or text selection via the REST API.
Build with
npm run -w @ivotoby/postgram-browser-extension-chrome package(or the Firefox equivalent); install unpacked from the per-package README.
Repository Layout
src/
auth/ API key validation and auth middleware
cli/ CLI for humans/agents and admin CLI
db/ Pool and migrations
migrate-talon/ Talon import path
services/ Business logic (entities, search, edges, sync, extraction)
transport/ REST and MCP adapters
types/ Shared types
util/ Errors, audit, logging
ui/ User-facing web UI and Admin UI
cli/ Published @ivotoby/postgram-cli package
docker/ Container entrypoint and secret bootstrap scripts
bin/ Local operator wrappers
packages/
browser-extension-chrome/ Chromium web clipper (MV3)
browser-extension-firefox/ Firefox web clipper (MV3)
tests/
contract/ REST and MCP contract tests
integration/ Service and CLI integration tests
unit/ Pure logic tests
Requirements
- Docker and Docker Compose for the recommended deployment
- Node.js 22+ for the
pgmCLI or local development - a reachable OpenAI or Ollama embedding provider for enrichment and search
Optional:
- OpenAI API key (for OpenAI embeddings or extraction)
- Anthropic API key (for LLM extraction)
- Ollama (for local embeddings or LLM extraction)
gpg(for encrypted CLI backups)
Docker Setup Details
1. Start Docker Compose
docker compose up -d --build
The default Compose path does not require manual .env edits. On first run it
creates a persistent postgram_secrets Docker volume containing:
- the Postgres password used by the app container
ADMIN_MFA_SECRET_KEYfor encrypted admin TOTP seedsADMIN_SETTINGS_ENCRYPTION_KEYfor DB-backed provider secrets
If an existing Docker install already has POSTGRES_PASSWORD in .env, the
first start after this change copies that legacy password into
postgram_secrets/postgres-password instead of generating a different database
password. Keep the old .env value in place for that first upgraded start.
The API binds to 127.0.0.1:3100 and the UI binds to 127.0.0.1:3000 by
default. Use POSTGRAM_API_PORT=<port> or UI_PORT=<port> as shell overrides
when running more than one local stack.
To use an existing Postgres cluster with Compose, set POSTGRES_HOST,
POSTGRES_PORT, POSTGRES_DB, and POSTGRES_USER on mcp-server in a Compose
override and remove the postgres dependency, as in the operator examples. If
that external cluster requires password auth, set POSTGRES_PASSWORD in .env;
if it uses passwordless local auth, leave POSTGRES_PASSWORD= blank. You can
also bypass the split settings entirely by setting DATABASE_URL.
For embeddings, Compose preserves the OpenAI default when OPENAI_API_KEY is
present. If no OpenAI key and no explicit EMBEDDING_PROVIDER are supplied, the
container entrypoint chooses local Ollama embeddings so a clean stack can boot
before provider secrets are configured.
2. Complete first admin setup
On first start, the API container prints a clear one-time bootstrap banner with the token:
Postgram first admin setup
Bootstrap token: ...
Open http://127.0.0.1:3000/admin and paste this token.
If the console has scrolled, read the same one-time bootstrap token from the trusted local operator channel:
docker compose logs mcp-server | grep 'Bootstrap token:' | tail -n 1
Then open http://127.0.0.1:3000/admin, create the first admin user, and
complete MFA enrollment. The bootstrap token is stored hash-only in Postgres,
expires after 24 hours, and is invalidated after the first admin is created.
If you changed the Postgres target, copy the latest bootstrap-token log line;
older lines may belong to a previous database and will be rejected.
After active MFA login, the Admin dashboard opens a guided onboarding flow until it is completed or deliberately skipped. The guide explains the setup path in plain operator language:
- what bootstrap, admin login, and MFA confirmation protect
- how provider settings, embedding dimensions, extraction models, and write-only provider secrets fit together
- when to validate and apply saved provider configuration
- why backup/restore is staged before switch-over
- how maintenance dry-runs, re-extraction, re-embedding, and edge pruning work
Onboarding progress is stored server-side in Postgres. Refreshing the browser,
closing the tab, logging out and back in, or restarting the Docker containers
resumes at the latest saved step as long as the existing pgdata volume is
preserved. The Onboarding tab remains available from the dashboard after skip
or completion.
For local Docker testing, preserve the database volume:
docker compose up -d --build
docker compose restart mcp-server postgram-ui
Do not use docker compose down -v when testing onboarding resume behavior.
That command removes named volumes, including the pgdata Postgres volume, and
will reset the server-side onboarding state along with the database.
3. Check health
curl http://127.0.0.1:3100/health
Expected:
status: "ok"postgres: "connected"
4. Configure providers and create API keys
Use the Admin dashboard in the browser for the supported happy path:
- Onboarding tab: resume, skip, or complete the Docker-first setup guide.
- Config tab: save provider settings and write-only provider secrets.
- Overview tab: create Postgram API keys, inspect health, queue, stats, config/model/job status, and audit rows.
- Maintenance tab: run safe dry-run previews and poll job status before any destructive apply.
- Backup tab: download a gzipped v2 archive containing a data-only PostgreSQL
custom dump plus redacted runtime configuration. Restore is intentionally
staged: the server rejects legacy v1/full-schema archives, accepts only
approved Postgram table-data entries from
pg_restore --list, creates the trusted schema from bundled migrations, and restores the accepted data into a new database name. Health checks run before operator-approved switch-over. If the restored database misbehaves, roll back by restoring the previousPOSTGRES_DBorDATABASE_URLsetting and restartingmcp-server/postgram-ui; the old database is left untouched for this emergency path.
Normal Docker setup and maintenance should not require pgm-admin after
startup/bootstrap. The pgm-admin CLI remains documented below for emergency
recovery, embedding migrations, raw SQL inspection, and advanced operator
jobs.
Docker Secret Backup And Failure Behavior
Back up the postgram_secrets Docker volume separately from database backups.
Database backups contain encrypted provider secrets and encrypted TOTP factors;
they do not contain the installation keys needed to decrypt them.
Losing or replacing ADMIN_MFA_SECRET_KEY prevents existing TOTP factors from
being verified. Losing or replacing ADMIN_SETTINGS_ENCRYPTION_KEY prevents
stored provider secrets from being decrypted. With the wrong settings key,
provider config reads remain redacted, provider apply/runtime secret use fails
closed, and operators must restore the original key or re-save provider
secrets after a deliberate rotation/recovery procedure.
For Docker Compose, missing secret files are generated only on an empty
postgram_secrets volume. Invalid persisted secret files fail container
startup before the server binds. Optional env overrides still work, but keep
those values outside database backups and browser storage.
Environment Variables
Server
| Variable | Required | Default | Description |
|---|---|---|---|
DATABASE_URL |
non-Compose | Docker secret file + Postgres env | Full Postgres connection string. Compose constructs it from the generated Postgres password secret when unset. |
POSTGRES_HOST |
no | postgres |
Compose Postgres host used when DATABASE_URL is unset. Override to host.docker.internal or another hostname for an existing cluster. |
POSTGRES_PORT |
no | 5432 |
Compose Postgres port used when DATABASE_URL is unset. |
POSTGRES_DB |
no | postgram |
Compose Postgres database used when DATABASE_URL is unset. |
POSTGRES_USER |
no | postgram |
Compose Postgres user used when DATABASE_URL is unset. |
POSTGRES_PASSWORD |
no | Docker secret file | Compose Postgres password used when DATABASE_URL is unset. For external hosts, an explicit blank value builds a passwordless URL. |
ADMIN_MFA_SECRET_KEY |
admin setup | Docker secret file | Stable 32+ character secret used to encrypt admin TOTP seeds. Compose generates and persists it in postgram_secrets when unset. |
OPENAI_API_KEY |
conditional | Required when EMBEDDING_PROVIDER=openai OR (EXTRACTION_ENABLED=true AND EXTRACTION_PROVIDER=openai). Optional otherwise. |
|
ADMIN_SETTINGS_ENCRYPTION_KEY |
when saving admin-managed secrets | Docker secret file | 32-byte base64url installation key used to encrypt DB-backed provider secrets. Compose generates and persists it in postgram_secrets when unset. Keep it outside database backups. |
PORT |
no | 3100 |
HTTP/MCP server port |
POSTGRAM_API_PORT |
no | 3100 |
Docker Compose host port for the API/backend. The container listen port stays 3100. |
UI_PORT |
no | 3000 |
Docker Compose host port for the UI. |
OAUTH_ENABLED |
no | false |
Enable OAuth authorization-code, PKCE, and Dynamic Client Registration routes for native remote MCP connectors. |
PUBLIC_BASE_URL |
conditional | Public HTTPS origin for OAuth metadata and callback URLs. Required when OAUTH_ENABLED=true. Example: https://postgram.example.com. |
|
LOG_LEVEL |
no | info |
pino log level |
ENRICHMENT_POLL_INTERVAL_MS |
no | 1000 |
Enrichment worker poll interval |
Embeddings
| Variable | Required | Default | Description |
|---|---|---|---|
EMBEDDING_PROVIDER |
no | openai (Compose auto-selects) |
openai or ollama. Compose keeps OpenAI when OPENAI_API_KEY is present, otherwise chooses Ollama unless explicitly set. |
EMBEDDING_MODEL |
no | per-provider | Defaults: text-embedding-3-small (openai, 1536 dims), bge-m3 (ollama, 1024 dims) |
EMBEDDING_DIMENSIONS |
no | per-provider | Must match the active embedding_models row. Run ./bin/pgm-admin embeddings migrate --target-dimensions <N> --yes to change. |
EMBEDDING_BASE_URL |
when provider=ollama | falls back to OLLAMA_BASE_URL |
Embedding host. Independent from LLM-extraction host so embeddings and inference can target different machines. |
EMBEDDING_API_KEY |
no | Optional bearer token for EMBEDDING_BASE_URL. |
When Postgram runs in Docker and Ollama runs directly on the Docker host, use http://host.docker.internal:11434 for EMBEDDING_BASE_URL; localhost inside the container points at the Postgram container, not the host machine.
See specs/002-local-embeddings/quickstart.md for a walkthrough of fresh-install-on-Ollama and migrating from OpenAI.
LLM Extraction
| Variable | Required | Default | Description |
|---|---|---|---|
EXTRACTION_ENABLED |
no | false |
Enable LLM relationship extraction |
EXTRACTION_MEMORY_MODE |
no | embed_only |
Controls graph extraction for type=memory: embed_only keeps all memories searchable through embeddings without graph/entity extraction; extract_durable extracts only durable_memory; extract_all extracts both durable and session-context memories. |
EXTRACTION_PROVIDER |
no | openai |
LLM provider: openai, anthropic, ollama, or openai-compatible |
EXTRACTION_MODEL |
no | per-provider | Model name (defaults: gpt-4o-mini for OpenAI, claude-haiku-4-5-20251001 for Anthropic, llama3.2 for Ollama, gpt-4o-mini for OpenAI-compatible) |
EXTRACTION_BASE_URL |
when provider=openai-compatible | Base URL for OpenAI-compatible chat-completions APIs, including any /v1 path. Postgram appends /chat/completions. Example: http://host.docker.internal:8000/v1. |
|
EXTRACTION_API_KEY |
no | Optional bearer token for EXTRACTION_BASE_URL. |
|
EXTRACTION_AUTO_CREATE_ENTITIES |
no | false |
When true, extraction creates stub entities for referenced targets that don't yet exist (e.g. a person named in a document gets a person entity automatically). Tagged auto-created; metadata records the originating document. |
EXTRACTION_AUTO_CREATE_TYPES |
no | person,project,interaction |
Comma-separated list of entity types eligible for auto-creation. document, task, memory are intentionally excluded from the default to keep those user-authored. |
EXTRACTION_AUTO_CREATE_MIN_CONFIDENCE |
no | 0.7 |
Minimum per-extraction confidence (0–1) required to auto-create an entity. Raise to cut noise, lower for a denser graph. |
ANTHROPIC_API_KEY |
when provider=anthropic | Anthropic API key | |
OLLAMA_BASE_URL |
no | http://localhost:11434 |
Ollama server URL |
EXTRACTION_REASONING_EFFORT |
no | unset | minimal | low | medium | high. Forwarded as reasoning_effort to OpenAI and Ollama for reasoning models (o-series, gpt-5, gpt-oss). When set, overrides the implicit minimal that EXTRACTION_DISABLE_THINKING=true sends to OpenAI. |
LLM_REQUEST_TIMEOUT_MS |
no | 120000 |
Hard cap per LLM call in milliseconds. Bump this when running slow local models (e.g. gpt-oss:120b-cloud). |
EXTRACTION_SEMANTIC_NEIGHBORS_ENABLED |
no | false |
Enable semantic neighbor linking (see below). |
EXTRACTION_SEMANTIC_NEIGHBORS_MAX |
no | 10 |
Maximum number of neighbor edges to create per entity. |
EXTRACTION_SEMANTIC_NEIGHBORS_MIN_SIMILARITY |
no | 0.65 |
Minimum cosine similarity (0–1) for an entity to qualify as a neighbor. Raise to reduce noise; lower if you're finding too few neighbors. The right value depends on your embedding model's similarity distribution — use ./bin/pgm-admin link-neighbors --all --dry-run to inspect actual scores before tuning. |
Semantic neighbor linking: the LLM extraction pass only finds entities that
are explicitly named in the source content. It misses entities that are
thematically related but not cited by name — a weekly kickoff meeting about the
same initiative, a wiki page covering the same strategy, a decision memo about
the same project. When EXTRACTION_SEMANTIC_NEIGHBORS_ENABLED=true, a second
pass runs after LLM extraction that queries the knowledge store for entities
whose stored chunk embeddings are cosine-similar to the source entity's own
embeddings, and links them with related_to. No extra LLM or embedding API
calls are needed — the source entity's chunks are already stored by the
enrichment step that runs before extraction. Edges created by this pass carry
source = 'semantic-neighbor' so they are distinguishable from LLM-extracted
edges. Entities already linked by the LLM pass are excluded to avoid a weaker
related_to edge shadowing a stronger-typed edge for the same pair.
Backfilling and maintaining neighbor edges: the ./bin/pgm-admin link-neighbors
command runs the semantic neighbor pass directly — no LLM calls, no extraction
queue, just cosine similarity over stored chunks. Use it to backfill an
existing graph or as a recurring maintenance job after new entities are added.
# Backfill all enriched entities (safe to re-run — edges are upserted).
./bin/pgm-admin link-neighbors --all
# Only documents:
./bin/pgm-admin link-neighbors --type document
# Single entity:
./bin/pgm-admin link-neighbors --id <uuid>
# Preview what would be linked and at what similarity — no edges created:
./bin/pgm-admin link-neighbors --id <uuid> --dry-run
./bin/pgm-admin link-neighbors --all --dry-run
# Tune the similarity threshold or edge cap:
./bin/pgm-admin link-neighbors --all --min-similarity 0.75 --max-neighbors 5
# Process in bounded batches (oldest-first):
./bin/pgm-admin link-neighbors --all --limit 500
Use --dry-run to inspect actual cosine similarity scores before committing edges — especially useful when tuning --min-similarity for a new embedding model. The output shows each entity and its candidate neighbors with their raw similarity scores.
If you also want to re-run LLM extraction at the same time (e.g. after enabling
EXTRACTION_SEMANTIC_NEIGHBORS_ENABLED=true), use reextract instead — the
worker runs both the LLM pass and the neighbor pass together:
./bin/pgm-admin reextract --all
Note: --clean-edges on reextract only removes edges with
source='llm-extraction' — it does not touch semantic-neighbor edges. For a
full clean slate:
DELETE FROM edges WHERE source = 'semantic-neighbor';
Scheduling as a recurring maintenance job: because link-neighbors is
cheap (no LLM calls) and idempotent (edges are upserted, not duplicated), it
works well as a weekly cron job that keeps the neighbor graph fresh as new
entities are added. Example cron entry running every Sunday at 02:00:
0 2 * * 0 cd /path/to/postgram && ./bin/pgm-admin link-neighbors --all
Or with Docker Compose:
./bin/pgm-admin link-neighbors --all
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